pairwise.adonis: this function taken from...

In Jtrachsel/funfuns: Functions I Use (Title Case)

Description

this function taken from https://www.researchgate.net/post/How_can_I_do_PerMANOVA_pairwise_contrasts_in_R

Usage

pairwise.adonis(
  x,
  factors,
  sim.method = "bray",
  p.adjust.m = "none",
  permutations = 999
)

Arguments

x	An OTU table with taxa as columns and samples as rows
factors	a vector containing the groups you want compared
sim.method	distance metric to use for (dis)similarity values, default is 'bray'
p.adjust.m	method to use for pvalue correction.
permutations	number of permutations to use

Value

returns a dataframe containing the PERMANOVA rsq, fstat, and pvalue for each pariwise comparison

Examples

#soon

Jtrachsel/funfuns documentation built on Aug. 8, 2021, 7:31 p.m.