API for JuanXie19/LRT
LRT (Lineage estimation by integrative analysis of single-cell RNA-seq and TCR-seq data)
| Global functions | |
|---|---|
| CombinedDataSet-class | Man page |
| TrajectoryDataSet-class | Man page |
| bound.input.return | Source code |
| checkBlanks | Source code |
| checkList | Source code |
| clonalDiversity | Man page Source code |
| clonalOverlap | Man page Source code |
| clonalProportion | Man page Source code |
| diversityCall | Man page Source code |
| expression2List | Man page Source code |
| expression2List_seurat | Man page Source code |
| getCirclize | Man page Source code |
| getClonotypeLineages | Man page |
| getCombinedDataSet | Man page |
| getCombinedDataSet,data.frame,Seurat-method | Man page |
| getOverallTrajectory,CombinedDataSet-method | Man page |
| getShinyInput | Man page |
| getTCRs | Man page |
| getTCRs,CombinedDataSet-method | Man page |
| grabMeta | Man page Source code |
| grabMeta_seurat | Man page Source code |
| groupList | Source code |
| jaccardIndex | Man page Source code |
| list.input.return | Man page Source code |
| lrtLineages | Man page |
| lrtLineages,TrajectoryDataSet-method | Man page |
| lrtParams | Man page |
| lrtParams,TrajectoryDataSet-method | Man page |
| morisitaIndex | Man page Source code |
| occupiedscRepertoire | Man page Source code |
| off.the.chain | Source code |
| overlapIndex | Man page Source code |
| quiet | Source code |
| rawIndex | Source code |
| reducedDim | Man page |
| select.gene | Source code |
| seuratClusterLabels | Man page |
| seuratClusterLabels,CombinedDataSet-method | Man page |
| shinyClone | Man page Source code |
| shinyClust | Man page Source code |
| short.check | Source code |
| theCall | Source code |
