shinyClust: cluster inferred clonotype trajectories
In JuanXie19/LRT: LRT (Lineage estimation by integrative analysis of single-cell RNA-seq and TCR-seq data)
shinyClust R Documentation
cluster inferred clonotype trajectories
Description
cluster inferred clonotype trajectories
Usage
shinyClust(TrajectoryDataSet = NULL)
Arguments
Combined
a CombinedDataSet object
trajectory
a TrajectoryDataSet object
Examples
TCR <-read.csv("/PATH/TO/YOUR/scTCR-seqData/",header=T)
load('Mice.sub2.rda')
Combined <- getCombinedDataSet(TCR,Mice.sub)
Trajectory <- getOverallTrajectory(Combined,start.clus = NULL, end.clus = NULL, dist.method = 'simple', use.median = TRUE)
shinyClust(Trajectory)
JuanXie19/LRT documentation built on April 14, 2025, 7:09 p.m.
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| shinyClust | R Documentation |
cluster inferred clonotype trajectories
Description
cluster inferred clonotype trajectories
Usage
shinyClust(TrajectoryDataSet = NULL)
Arguments
Combined |
a |
trajectory |
a |
Examples
TCR <-read.csv("/PATH/TO/YOUR/scTCR-seqData/",header=T)
load('Mice.sub2.rda')
Combined <- getCombinedDataSet(TCR,Mice.sub)
Trajectory <- getOverallTrajectory(Combined,start.clus = NULL, end.clus = NULL, dist.method = 'simple', use.median = TRUE)
shinyClust(Trajectory)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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