expression2List_seurat: Allows users to take the meta data in Seurat and place it...

In JuanXie19/LRT: LRT (Lineage estimation by integrative analysis of single-cell RNA-seq and TCR-seq data)

Allows users to take the meta data in Seurat and place it into a list that will work with all the functions

Description

Allows users to perform more fundamental measures of clonotype analysis using the meta data from the Seurat object. For Seurat objects the active identity is automatically added as "cluster". Remaining grouping parameters or Seurat objects must appear in the meta data.

Usage

expression2List_seurat(seurat, group.by)

Arguments

seurat	a seurat object.
group.by	The column header to group the new list. NULL will return clusters.

Value

list derived from the meta data of seurat object with elements divided by the group.by parameter

Examples

Combined <- getCombinedDataSet(TCR, Mice.sub2)
newList <- expression2List(Combined, group.by = "seurat_clusters")

JuanXie19/LRT documentation built on April 14, 2025, 7:09 p.m.