getCirclize: a function to prepare input for chord diagram

In JuanXie19/LRT: LRT (Lineage estimation by integrative analysis of single-cell RNA-seq and TCR-seq data)

a function to prepare input for chord diagram

Description

a function to prepare input for chord diagram

Usage

getCirclize(Combined, group.by, proportion)

Arguments

group.by	The group header for which you would like to analyze the data.
proportion	Binary will calculate relationship unique clonotypes (proportion = FALSE) or a ratio of the group.by variable (proportion = TRUE)
sc	object after combineExpression().
cloneCall	How to call the clonotype - VDJC gene (gene), CDR3 nucleotide (nt), CDR3 amino acid (aa), or VDJC gene + CDR3 nucleotide (strict).

Value

data frame of shared clonotypes between groups

Author(s)

Dillon Corvino, Nick Borcherding

JuanXie19/LRT documentation built on April 14, 2025, 7:09 p.m.