DGEs: Extracting covariate information including adjustment factors...

In JungsooGIM/PSARseq: Population stratification analysis for RNA-Seq data

Description

Extracting covariate information including adjustment factors from non-negative matrix factorization

Usage

DGEs(PSARobject)

Arguments

PSARObj

An input object: output of PSAR() function

Details

See the referenced paper.

Value

dgeset

a covariate file

Author(s)

Jungsoo Gim

References

Jungsoo Gim and Christoph Lange, PSARseq (2017)

Examples

cnts <- matrix(rnbinom(1000, mu=10, size=1), nrow=100)
grps <- factor(rep(c("a", "b"), each=5))
res <- PSAR(cnts, grps, n.factor=1)
head(FACTORs(res))

JungsooGIM/PSARseq documentation built on May 16, 2019, 10:04 a.m.