Description Usage Arguments Details Value Author(s) References Examples
One-step function performing differential expression analysis adjusting population stratification
1 | PSAR(Obj, grps, n.factor = 2)
|
Obj |
An input object: SeqExpressionSet (EDASeq), DGEList (edgeR) or raw count in "matrix" class are available |
grps |
A vector or data.frame indicating the variable to be tested (in case of data.frame, the first column should be the variable to be tested) |
n.factor |
The number of factors in non-negative factorization (default = 2) |
See the referenced paper.
resOut |
a list of including two variables: dgeset (DGEList) and fit (glmFit) |
Jungsoo Gim
Jungsoo Gim and Christoph Lange, PSARseq (2017)
1 2 3 4 |
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