avg_phgropro: avg_phgropro Copyright (c) 2019. Kaleido Biosciences. All...

In Kaleido-Biosciences/phgrofit: Extracting Physiological Data From Kinetic OD600 and pH Curves

Description

This function is intended to make averaging OD600 and pH values from phgropro across groups very easy. This functiuon also returns the standard deviation for OD600 and pH. New Sample.IDs are assigned by concatenating the conditions that the user chooses to group by in order to make it easy to match the output avg_phgropro to avg_phgrofit.

Usage

avg_phgropro(phgropro_output, group_by = "Sample.ID")

Arguments

phgropro_output	The output of phgropro.
group_by	Character vector of the names of the columns that you would like to group by.

Value

a data frame with mean_OD600, sd_OD600, mean_pH, sd_pH across the groups specified

Examples

#This would return a data frame with the average and sd pH and OD600 values when grouped by Community and Compound.
## Not run: 
p1 = avg_phgropro(phgropro_output,c("Community","Compound"))

## End(Not run)

Kaleido-Biosciences/phgrofit documentation built on Feb. 8, 2022, 5:16 a.m.