model_fit_check: model_fit_check Copyright (c) 2019. Kaleido Biosciences. All...

In Kaleido-Biosciences/phgrofit: Extracting Physiological Data From Kinetic OD600 and pH Curves

Description

This function prints graphs visually displaying the model fits from a randomly sampled set of variables of the users choosing. A replicate from each unique condition specified is randomly sampled and the fit and extracted parameters that are easy to visualize are shown.

Usage

model_fit_check(phgropro_output, grouping_vars = "Sample.ID")

Arguments

phgropro_output	This is the output from phgropro. It contains tidy pH and OD600 data.
grouping_vars	This contains the variables you would like to see the fit for a randomly sampled replicate of.

Value

prints a randomly sampled plot from each condition to the console as specified by grouping_vars.

Examples

## Not run: phgropro_output = phgrofit::phgropro_output("Filepath of biotek export.txt","filepath of metadata.csv,Plate_Type = 384)
model_fit_check(phgropro_output,grouping_vars = c("Community","Compound))
## End(Not run)
#This would print graphs from a randomly sampled replicate of each combination of variables specified by grouping_vars

Kaleido-Biosciences/phgrofit documentation built on Feb. 8, 2022, 5:16 a.m.