phylotime: Phylotime for reconstructing time-scaled phylogeny based on...
In Kalhor-Lab/QFM: Quantitative Fate Mapping with ICE-FASE and Phylotime
phylotime R Documentation
Phylotime for reconstructing time-scaled phylogeny based on lineage barcodes
Description
Phylotime for reconstructing time-scaled phylogeny based on lineage barcodes
Usage
phylotime(sc_mat, t_total, mut_p = NULL, return_dist = F, parallel = T)
Arguments
sc_mat
character matrix cell x barcoding sites
t_total
total amount of time since barcode activation
return_dist
whetehr to return pairwise distance between cells, by default, an ape tree is returned
Kalhor-Lab/QFM documentation built on Nov. 25, 2024, 10:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| phylotime | R Documentation |
Phylotime for reconstructing time-scaled phylogeny based on lineage barcodes
Description
Phylotime for reconstructing time-scaled phylogeny based on lineage barcodes
Usage
phylotime(sc_mat, t_total, mut_p = NULL, return_dist = F, parallel = T)
Arguments
sc_mat |
character matrix cell x barcoding sites |
t_total |
total amount of time since barcode activation |
return_dist |
whetehr to return pairwise distance between cells, by default, an ape tree is returned |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.