ssmdC.homoVAR.frame.fn: calculate the critical value of SSMD between a positive...
In Karena6688/qcSSMD: calcuate SSMD for quality control

Description Usage Arguments Value Author(s) Examples

View source: R/ssmdC.homoVAR.frame.fn.R

A function to calculate the critical value of SSMD between a positive control and a negative reference in a data frame for an HTS study

ssmdC.homoVAR.frame.fn(
  dataIn.df,
  negREF = "Sample",
  positiveCTRL = "positive control",
  pREFtrim = 0,
  Alpha = 0.05,
  Beta = 3
)

`dataIn.df`	a data frame with plate ID (or name), well usage and intensity
`negREF`	name of wells to be used as a negative reference
`positiveCTRL`	name of wells to be used as a positive control
`pREFtrim`	the total portion of data to be trimmed in the negative reference
`Alpha`	specify the significant level
`Beta`	the population value of SSMD

a matrix containing estimated SSMD value and variance for each plate

Xiaohua Douglas Zhang and Dandan Wang 07/2020

 data("data.CVB3CRISPR", package="qcSSMD")
  data.df = dataCVB3.df
  ssmdC.homoVAR.frame.fn(dataIn.df=data.df, negREF="Sample", positiveCTRL="Positive Control",
                         pREFtrim=0.05, Alpha=0.05, Beta=3)