zFactor.frame.fn: calculate the plug-in value of z-factor between a positive...
In Karena6688/qcSSMD: calcuate SSMD for quality control

Description Usage Arguments Value Author(s) Examples

View source: R/zFactor.frame.fn.R

A function to calculate the plug-in value of z-factor between a positive control and

zFactor.frame.fn(
  dataIn.df,
  negREF = "Sample",
  positiveCTRL = "posCTRL",
  pREFtrim = 0,
  k = 3
)

`dataIn.df`	a data frame with plate ID (or name), well usage and intensity
`negREF`	name of wells to be used as a negative reference
`positiveCTRL`	name of wells to be used as a positive control
`pREFtrim`	the total portion of data to be trimmed in the negative reference
`k`	the coefficient in the z-factor

a matrix containing estimated plug-in z-factor for each plate

Xiaohua Douglas Zhang and Dandan Wang 07/2020

 data("data.CVB3CRISPR", package="qcSSMD")
  data.df = dataCVB3.df
  zFactor.frame.fn(dataIn.df=data.df, negREF="Sample", positiveCTRL="Positive Control",
                   pREFtrim=0.05, k=3)