extend_group: Extends the number of subgroups shown for one particular...

In KarstensLab/microshades: A custom color palette for improving data visualization

Extends the number of subgroups shown for one particular group by adding additional colors.

Description

Extends the number of subgroups shown for one particular group by adding additional colors.

Usage

extend_group(
  mdf,
  cdf,
  group_level,
  subgroup_level,
  group_name,
  existing_palette,
  new_palette,
  n_add = 5,
  light = TRUE
)

Arguments

mdf	melted data frame with microshades group processing
cdf	color data frame
group_level	string of larger taxonomic group
subgroup_level	string of smaller taxonomic group
group_name	name of the group to extend the palette for
existing_palette	name of current palette of group to extend
new_palette	name of new palette to add for extending the particular group's colors
n_add	number of colors to add
light	orientation of colors added; will make a difference if n_add is less than the number of colors in the new palette

Value

list

• "mdf"new mdf with reclassified groups that include the group exention

• "cdf"new cdf with reclassified groups that include the group exention

Examples

updated_objs <- extend_group(mdf, cdf, "Phylum", "Genus", "Firmicutes", "micro_purple", "micro_cvd_purple")

updated_objs$mdf
updated_objs$cdf

KarstensLab/microshades documentation built on June 11, 2024, 11:41 a.m.