plot_microshades: Plot the mdf created with the microshades package

In KarstensLab/microshades: A custom color palette for improving data visualization

Plot the mdf created with the microshades package

Description

Creates a stacked abundance ggplot with color abundance organization

Usage

plot_microshades(
  mdf_group,
  cdf,
  group_label = "Phylum Genus",
  x = "Sample",
  y = "Abundance"
)

Arguments

mdf_group	data.frame, melted data frame processed by microshades functions
cdf	data.frame containing the color key
group_label	string of smaller taxonomic group
x	string x-axis element
y	string y-axis element

Value

A ggplot2 plot.

Examples

library(phyloseq)
data(GlobalPatterns)

mdf <- prep_mdf(GlobalPatterns)

color_obj <- create_color_dfs(mdf)

mdf_group <- color_obj$mdf
cdf <- color_obj$cdf

plot <- plot_microshades(mdf_group, cdf)

KarstensLab/microshades documentation built on June 11, 2024, 11:41 a.m.