plot_contributions: Creates median and mean abundance barplots, and boxplots for...

In KarstensLab/microshades: A custom color palette for improving data visualization

Creates median and mean abundance barplots, and boxplots for microshades taxa contribution plots keeping colors consistent in the microshades stacked barplots

Description

Creates median and mean abundance barplots, and boxplots for microshades taxa contribution plots keeping colors consistent in the microshades stacked barplots

Usage

plot_contributions(mdf, cdf, col_name, data_match, short_name = NULL)

Arguments

mdf	melted data frame with microshades group processing
cdf	color data frame
col_name	name of column to subset from
data_match	specific data to subset match
short_name	alternate group name in both the mdf and cdf, note the group column still must exist

Value

list

• "box" boxplot

• "mean" barplot of mean abundance

• "median"barplot of median abundance

Examples

plots <- plot_contributions(mdf, cdf,  "dmm", 1, short_name = "group_short")

plots$box
plots$mean
plots$median

plots <- plot_contributions(mdf, cdf,  "sex", "female")

KarstensLab/microshades documentation built on June 11, 2024, 11:41 a.m.