Files in KasperThystrup/EncircleR
EncircleR
.Rbuildignore
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
EncircleR.Rproj
LICENSE
LICENSE.md
Metadata_example.tsv
NAMESPACE
NEWS.md
R/app_config.R
R/app_server.R
R/app_ui.R
R/fct_IdxCommands.R
R/fct_STARCalls.R
R/fct_baseHelpers.R
R/fct_circBase.R
R/fct_circTable.R
R/fct_deploy.R
R/fct_ensemblReleases.R
R/fct_generateAlignmentStats.R
R/fct_generateFiltrationStats.R
R/fct_importMetadata.R
R/fct_makePlots.R
R/fct_referenceDownload.R
R/fct_renderSamples.R
R/fct_selectReferences.R
R/fct_setupFastpCommands.R
R/golem_utils_server.R
R/golem_utils_ui.R
R/mod_STAR_call.R
R/mod_STAR_idx.R
R/mod_applyFilters.R
R/mod_callFastp.R
R/mod_circTable.R
R/mod_deplyCirculaR.R
R/mod_getAnnotation.R
R/mod_importMetadata.R
R/mod_mappingPlots.R
R/mod_selectReferences.R
R/mod_setupExperiment.R
R/run_app.R
R/utils_check_cores.R
R/utils_selectReferences.R
R/utils_supportedCompressions.R
R/utils_supportedOrganism.R
README.Rmd
README.md
codecov.yml
data-raw/meta_example.R
data/meta_example.rda
dev/01_start.R
dev/02_dev.R
dev/03_deploy.R
dev/run_dev.R
inst/WORDLIST
inst/app/www/empty
inst/extdata/Metadata_example.tsv
inst/golem-config.yml
man/EnsDbExtremities.Rd
man/arbitrayFilterStats.Rd
man/availableEnsemblReleases.Rd
man/checkMetadataFilepaths.Rd
man/determineExtremities.Rd
man/downloadFile.Rd
man/extractEnsemblReleaseNumerics.Rd
man/extractReferenceMeta.Rd
man/fileExt.Rd
man/generateSTARidx.Rd
man/getDownloadLinks.Rd
man/importMetadata.Rd
man/makeTables.Rd
man/plotFiltrationStats.Rd
man/referenceExtremities.Rd
man/run_app.Rd
man/supported_organisms.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-app.R
tests/testthat/test-golem-recommended.R
