getDownloadLinks: Find links for reference files

In KasperThystrup/EncircleR: EncircleR

Description

Find links for reference files

Usage

getDownloadLinks(meta, organism, build, release)

Arguments

meta	Dataframe with metadata on queries from AnnotationHub::mcols
organism	Character string with selected organism
build	Character string with the reference genome build
release	Numeric value with selected Ensembl release

Value

Named list with GTF and FA URLs

Examples

#ah <- AnnotationHub()
#organism <- "Homo_sapiens"
#build <- "GRCh38"
#release <- 100
#qry <- subset(ah, species == "Homo sapiens", rdataprovider == "Ensembl")
#meta <- mcols(qry)
#getDownloadLinks(meta, organism, build, release)

KasperThystrup/EncircleR documentation built on March 21, 2021, 10:13 p.m.