downloadFile: Download and decompress reference files

In KasperThystrup/EncircleR: EncircleR

Description

Download and decompress reference files

Usage

downloadFile(url, out_dir)

Arguments

url	Character with donwload URL
out_dir	Character vector stating the full path to the output directory

Value

Downloaded and unzipped file name

Examples

#ah <- AnnotationHub()
#organism <- "Homo_sapiens"
#build <- "GRCh38"
#release <- 100
#qry <- subset(ah, species == "Homo sapiens", rdataprovider == "Ensembl")
#meta <- mcols(qry)
#urls <- getDownloadLinks(meta, organism, build, release)
## Not run
#file1 <- downloadFile(url = urls[1], out_dir = "/tmp/file1"

KasperThystrup/EncircleR documentation built on March 21, 2021, 10:13 p.m.