Man pages for KasperThystrup/EncircleR
EncircleR
| arbitrayFilterStats | Arbitray Filter Statistics |
| availableEnsemblReleases | Find available Ensembl releases |
| checkMetadataFilepaths | Check filepaths from metadata exists |
| determineExtremities | Determine avialable releases based on extremities |
| downloadFile | Download and decompress reference files |
| EnsDbExtremities | Determine Ensembl release extremities Extracts the minimal... |
| extractEnsemblReleaseNumerics | Extract ensembl releases Extracts the numeric value of... |
| extractReferenceMeta | Extract reference data from Annotation object |
| fileExt | File extensions |
| generateSTARidx | Generate STAR index |
| getDownloadLinks | Find links for reference files |
| importMetadata | Import metadata Import the uploaded metadata file and updates... |
| makeTables | Make circRNA tables |
| plotFiltrationStats | Plot filtration stats |
| referenceExtremities | Determine avialable reference files release extermities |
| run_app | Run the Shiny Application |
| supported_organisms | List of organisms available in Ensembl. Lists must be... |
