joinStandData: joinStandData: compile stand data

In KateMMiller/forestNETN: Package for importing, joining and querying NETN forest database tables

joinStandData: compile stand data

Description

This function combines stand-level data for each plot, including cover by strata, earthworms presence/absence, plot slope, canopy cover, etc. Must run importData first.

Usage

joinStandData(
  park = "all",
  QAQC = FALSE,
  locType = c("VS", "all"),
  panels = 1:4,
  from = 2006,
  to = as.numeric(format(Sys.Date(), "%Y")),
  eventType = c("complete", "all"),
  output = "verbose",
  ...
)

Arguments

park	Combine data from all parks or one or more parks at a time. Valid inputs: "all" Includes all parks in the network "ACAD" Acadia NP only "MABI" Marsh-Billings-Rockefeller NHP only "MIMA" Minute Man NHP only "MORR" Morristown NHP only "ROVA" Roosevelt-Vanderbilt NHS only "SAGA" Saint-Gaudens NHS only "SARA" Saratoga NHP only "WEFA" Weir Farm NHS only
QAQC	Allows you to remove or include QAQC events. FALSE Default. Only returns visits that are not QAQC visits TRUE Returns all visits, including QAQC visits
locType	Allows you to only include plots that are part of the GRTS sample design or include all plots, such as deer exclosures "VS" Only include plots that are part of the Vital Signs GRTS sample design "all" Include all plots, such as plots in deer exclosures or test plots.
panels	Allows you to select individual panels from 1 to 4. Default is all 4 panels (1:4). If more than one panel is selected, specify by c(1, 3), for example.
from	Year to start analysis, ranging from 2006 to current year
to	Year to stop analysis, ranging from 2006 to current year
eventType	Allows you to include only complete sampling events or all sampling events "complete" Default. Only include sampling events for a plot that are complete. "all Include all plot events with a record in tblCOMN.Event, including plots missing most of the data associated with that event (eg ACAD-029.2010). This feature is currently hard-coded in the function.
output	Allows you to return all columns or just the most important columns for analysis. Valid inputs are "short" and "verbose".
...	Other arguments passed to function.

Value

returns a dataframe with stand data attached to location and event data. Field names starting with "Pct" are midpoints between cover class ranges (e.g., 62.5 is the midpoint for 50-75

Examples

## Not run: 
importData()
# import 4 years of MABI stand data
stand_df <- joinStandData(park = 'MABI', from = 2015, to = 2019)

# import all visits, including QAQC, from 2019 in ACAD. Only return important data fields.
acad_stand <- joinStandData(park = ACAD, from = 2019, to = 2019, QAQC = TRUE, output = 'short')

## End(Not run)

KateMMiller/forestNETN documentation built on Nov. 11, 2024, 6:07 a.m.