sumSpeciesList: sumSpeciesList: compile species list for each site

In KateMMiller/wetlandACAD: Package for compiling, querying, summarizing and plotting freshwater wetland data in Acadia NP

sumSpeciesList: compile species list for each site

Description

This function compiles species lists filtered on site, year, panel, QAQC status, and native vs exotic species.

Usage

sumSpeciesList(
  site = "all",
  panel = 1:4,
  years = 2012:format(Sys.Date(), "%Y"),
  QAQC = FALSE,
  species_type = "all",
  include_protected = T
)

Arguments

site	Character. Filter on site code. Options are "all" (default) or a vector of site codes ranging from "R-01" to "R-40".
panel	Numeric. Filter on panel number. By default, all panels are returned, and can be filtered by numbers 1 to 4.
years	Numeric. Filter on sample year, ranging from 2012 to 2024. By default, all years are returned. Note that years 2011, 2016, 2021, and 5-year intervals of years thereafter are EPA NWCA sites that are not
QAQC	Logical. Include QAQC visits (TRUE) or drop QAQC visits (FALSE; default).
species_type	Character. Options are c("all", "native", "exotic")
include_protected	Logical. If TRUE, returns protected species. If FALSE (default), removes protected species from returned data frame.

Value

Returns a data frame with species lists for each site.

Examples

## Not run: 
# import RAM data with protected records- Note that to include protected records
# protected species records must be included
importRAM(export_protected = T)

# Compile species list for all sites and all species
spp_all <- sumSpeciesList(include_protected = T)

# Compile species list for all sites and only non-protected species
spp_public <- sumSpeciesList(include_protected = T)

# Compile for 2024 and exotic species only
spp_exo_24 <- sumSpeciesList(years = 2024, species_type = "exotic")


## End(Not run)

KateMMiller/wetlandACAD documentation built on Dec. 21, 2024, 1:14 a.m.