assign_lineages: Lineage Assignment
In KathrynCampbell/MADDOG: Lineage Designation and Assignment
View source: R/assign_lineages.R
assign_lineages R Documentation
Lineage Assignment
Description
This function tests query sequences against a reference set of sequences and provides a lineage
assignment for the query sequences. It also returns information about each of the lineages assigned.
Usage
assign_lineages(sequences, reference)
Arguments
sequences
The query sequences to provide a lineage assignment for in fasta format
reference
The reference set to compare the query sequences to (Cosmo_WGS, Cosmo_N)
Value
A lineage assignment for each query sequence, and information about that lineage
KathrynCampbell/MADDOG documentation built on April 14, 2025, 10:40 a.m.
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View source: R/assign_lineages.R
| assign_lineages | R Documentation |
Lineage Assignment
Description
This function tests query sequences against a reference set of sequences and provides a lineage assignment for the query sequences. It also returns information about each of the lineages assigned.
Usage
assign_lineages(sequences, reference)
Arguments
sequences |
The query sequences to provide a lineage assignment for in fasta format |
reference |
The reference set to compare the query sequences to (Cosmo_WGS, Cosmo_N) |
Value
A lineage assignment for each query sequence, and information about that lineage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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