Man pages for KatrionaGoldmann/omicAnnotations
Use databases to annotate genomic and transcriptomic data
| associated_diseases | What diseases are known to be associated with genes |
| associated_eqtl | The known eQTL for snps or genes (eQTL catalogue) |
| associated_publications | What publications are available? |
| associated_snps | What snps are known to be associated with gene (GWAS... |
| associated_traits | What traits are known to be associated with snps (GWAS... |
| enriched_pathways | returns pathways from enrichR |
| full_gene_name | full gene names |
| gene_description | Rentrez gene descriptions |
| gene_summary | wrapper function to find all info about a list of genes |
| gene_types | genes EMR are interested in |
| get_api_key | Retrieves the DisGeNET API key for a user |
| gtex_eqtl | Multi-tissue eqtl |
| gtex_heatmap | gtex eqtl heatmap |
| lymphoid_pathways | Enriched pathways for lymphoid genes |
