associated_eqtl: The known eQTL for snps or genes (eQTL catalogue)

In KatrionaGoldmann/omicAnnotations: Use databases to annotate genomic and transcriptomic data

The known eQTL for snps or genes (eQTL catalogue)

Description

The known eQTL for snps or genes (eQTL catalogue)

Usage

associated_eqtl(
  snps = c(),
  genes = c(),
  p_cutoff = 1,
  verbose = FALSE,
  ncores = 2
)

Arguments

snps	A list of snp names
genes	A list of gene names (ensembl IDs)
p_cutoff	The pvalue cutoff for returning associations
verbose	Whether to spit out results
ncores	The number of cores to use

References

https://www.ebi.ac.uk/eqtl/api-docs/

KatrionaGoldmann/omicAnnotations documentation built on June 23, 2022, 2:15 p.m.