associated_diseases: What diseases are known to be associated with genes

In KatrionaGoldmann/omicAnnotations: Use databases to annotate genomic and transcriptomic data

What diseases are known to be associated with genes

Description

What diseases are known to be associated with genes

Usage

associated_diseases(
  genes,
  api_token,
  cutoff = 0,
  disease_classes = c("C20", "C05", "C10", "C17"),
  source = "CURATED",
  delim = "; ",
  verbose = TRUE
)

Arguments

genes	A list of gene names
api_token	The authentication token by DisGenNet (Sign up here: https://www.disgenet.org/signup/). Then run get_api_key(email, password).
cutoff	The DisGeNET Score cutoff
disease_classes	The MeSH disease classes to use ("C20"=Immune System Diseases)
source	The source of the GDA (see https://www.disgenet.org/dbinfo)
delim	The deliminator for returning traits
verbose	Whether to spit out results

References

https://www.disgenet.org/api/#/GDA/gdaByGene

KatrionaGoldmann/omicAnnotations documentation built on June 23, 2022, 2:15 p.m.