elementset_funs: Functions applied to elementsets in a 'BiocSet' object

Description Usage Arguments Value Examples

Description

All of the major methods applied to a BiocSet object can be explicitly applied to the elementset tibble. These functions bypass the need to use the es_activate function by indicating what function should be used on the elementset tibble.

Usage

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Arguments

.data

A BiocSet object.

...

Additional arguments passed to the function.

Value

A BiocSet object.

For tibble_from_elementset, a tibble.

For data.frame_from_elementset, a data.frame.

Examples

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es <- BiocSet(set1 = letters, set2 = LETTERS)
filter_elementset(es, element == "a" | element == "A")

es %>% select_elementset(element)

es %>% mutate_elementset(pval = rnorm(1:52))

es %>% summarise_elementset(n = n())

es %>% arrange_elementset(desc(element))

tbl <- tibble(x = 5:6, y = c("set1", "set2"))
es %>% left_join_elementset(tbl, by = c(set = "y"))

tibble_from_elementset(es)

data.frame_from_elementset(es)

Kayla-Morrell/BiocSet documentation built on April 24, 2020, 5:35 a.m.