Man pages for KevinSee/DABOM
Runs DABOM model

addTimeVaryDataAdd Time-Varying Data
calcRepGrpEscape_LGDEstimate Escapement for Reporting Groups - LGD
calcTribEscape_LGDEstimate Escapement - LGD
compileTransProbs_LGDCompile Transition Probabilities - LGD
compileTransProbs_PRACompile Transition Probabilities - PRA
compileTransProbs_TUMCompile Transition Probabilities - TUM
compileWeekTransProbsCompile Weekly Transition Probabilities - LGD
createDABOMcapHistPrep DABOM capture histories
createDirichletVectorCreate Dirichlet vector
createJAGSinputs_LGDPrep DABOM JAGS inputs
createJAGSinputs_PRAPrep DABOM JAGS inputs - PRA
createJAGSinputs_TUMPrep DABOM JAGS inputs - TUM
createNodeListNode List
defineRepGrpsDefine Report Groups - LGD
estModeEstimate Mode of Posterior Distribution
fixNoFishNodesModify basic JAGS model
renameTransParams_LGDRename DABOM Parameters - LGD
renameTransParams_PRARename DABOM Parameters - PRA
renameTransParams_TUMRename DABOM Parameters - TUM
setBranchNumsSet Branch Numbers
setBranchNums_LGDSet Branch Numbers - Lower Granite
setBranchNums_PRASet Branch Numbers - Priest
setBranchNums_TUMSet Branch Numbers - Tumwater
setInitialValues_LGDLGD DABOM Initial Values
setInitialValues_PRAPRA DABOM Initial Values
setInitialValues_TUMTumwater DABOM Initial Values
setSavedParams_LGDSet Saved Parameters - LGD
setSavedParams_PRASet Saved Parameters - PRA
setSavedParams_TUMSet Saved Parameters - TUM
summariseDetectProbsSummarise Detection Probabilities
summariseTransProbs_LGDSummarise Transition Probabilities - LGD
writeDABOM_LGDWrite Lower Granite Dam JAGS model
writeDABOM_PRAWrite Priest Rapids JAGS model
writeDABOM_TUMWrite Tumwater JAGS model
KevinSee/DABOM documentation built on April 29, 2018, 5:24 p.m.