calcAbundPost: Calculate Abundance Posteriors

In KevinSee/DABOM: Dam Adult Branch Occupancy Model

Calculate Abundance Posteriors

Description

Combines estimates of total escapement from STADEM with transition probabilities from DABOM to generate estimates of escapement above various detection sites.

Usage

calcAbundPost(
  move_post = NULL,
  abund_post = NULL,
  bootstrap_samp = 2000,
  .move_vars = c("origin", "param"),
  .abund_vars = c("origin"),
  time_vary_param_nm = NULL
)

Arguments

move_post	posterior draws of movement parameters, as generated by 'extractTransPost()' and 'compileTransProbs()'. Should contain columns named 'chain', 'iter' and 'value'.
abund_post	posterior draws of total abundance. Should contain columns named 'chain', 'iter' and 'tot_abund'.
bootstrap_samp	The number of samples to be drawn from the posteriors of the STADEM model and the DABOM model.
time_vary_param_nm	column name describing the time-varying strata for each location. Default value is 'strata_num'.

Author(s)

Kevin See

Examples

#calcAbundPost()

KevinSee/DABOM documentation built on April 4, 2024, 9:28 a.m.