View source: R/fixNoFishNodes.R
fixNoFishNodes | R Documentation |
Takes the basic JAGS model and modifies it based on particular observations. Specifically, it fixes the detection probability of all nodes that had no observations to 0.
fixNoFishNodes(
init_file = NULL,
file_name = NULL,
filter_ch = NULL,
parent_child = NULL,
configuration = NULL,
by_origin = FALSE,
fish_origin = NULL
)
init_file |
name (with file path) of basic JAGS model. |
file_name |
name (with file path) to save the model as. |
filter_ch |
filtered capture history as returned by the 'filterDetections()' function in the 'PITcleanr' package, which has then been verified by a user and all blank or NA 'user_keep_obs' entries have been completed. |
parent_child |
data frame with at least 'parent' and 'child' columns. Can be created with 'buildParentChild()' function in the 'PITcleanr' package. |
configuration |
is a data frame which assigns node names to unique SiteID, AntennaID, and site configuration ID combinations. One example can be built with the function 'buildConfig' |
by_origin |
should Dirichlet vectors be created for each fish origin separately ('TRUE'), or be common to all origins ('FALSE')? Default is 'FALSE' |
fish_origin |
tibble containing 'tag_code' and origin ("W" or "H") of every tag. If not supplied, every tag will be assigned "W". |
Kevin See
fixNoFishNodes()
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