writeJAGSmodel: Write JAGS model
In KevinSee/STADEM: Estimate escapement past a dam with a window and trap facility

writeJAGSmodel

R Documentation

Write JAGS model

Writes a text file version of the model to be used by JAGS

writeJAGSmodel(
  file_name = NULL,
  win_model = c("neg_bin", "neg_bin2", "pois", "quasi_pois", "log_space"),
  trap_est = T
)

`file_name`	name (with file path) to save the model as
`win_model`	what type of distribution should be used when modeling the window counts. `neg_bin` is a standard negative binomial distribution. `neg_bin2` is a more flexible version of a negative binomial, allowing the mean-variance relationship to take different forms. `pois` is a Poisson distribution. `quasi_pois` is the quasi-Poisson distribution. `log_space` assumes that the window counts have normal errors in log-space.
`trap_est`	should an estimate of escapement based on the adult fish trap rate be used as a second observation of true total escapement, together with the window counts? Default is `TRUE`. If `FALSE`, `win_model` is automatically set to `pois`.