summaryGws: Summarize the actual gScore and other results from genome...
In Kevinpen/SNPgrou: Association of SNP to Multiple Phenotypic Traits Group

Description Usage Arguments Value Examples

Summarize the actual gScore and other results from genome wide computation of gws() The input gScore must obtain from gws() return

1	summaryGws(gScore, threshold = 0.6)

`gScore`	The result data returned from genome wide computation of function gws, in data frame format First column is gSCore, followed by the related names of the loci in second column.
`threshold`	Define high gSore ss values that greater than this parameter

charcter Loci below are excluded from the calculation

#'@references González JR1, Armengol L, Solé X, Guinó E, Mercader JM, Estivill X, Moreno V(2007). SNPassoc: an R package to perform whole genome association studies. Bioinformatics. 2007 Mar 1;23(5):644-5. Epub 2007 Jan 31. DOI: 10.1093/bioinformatics/btm025.

data(hapData)
gScore <- gws(hapData, 5)
summaryGws(gScore)
#Found gScore values greater than 0.60 and responsible loci in the data:
#High gScore 0.787037 at chrosomal position: rs4661627"
#High gScore 0.675926 at chrosomal position: rs12749939"
#Loci below are excluded from the calculation because snnp data only contain one allel
#rs6691424 rs7553868  rs10922638 rs12097782 rs6428582
#rs12739867" rs189401   rs282036   rs526519   "rs2818971
#rs12756456
# summaryGws(gScore,0.7)
#Found gScore values greater than 0.70 and responsible loci in the data:
#High gScore 0.787037 at chrosomal position: rs4661627
#Loci below are excluded from the calculation because snnp data only contain one allel
#rs6691424  rs7553868  rs10922638 rs12097782 rs6428582
#rs12739867 rs189401   rs282036   rs526519   rs2818971
# rs12756456