Description Usage Arguments Value References Examples
Summarize the frequency and percentage of genotypes and alleles in the SNP data The input SNP data need prepared by prep() function
1 | summarySNP(x)
|
x |
The result data returned from prep function. it is a object of type "SNP" and "factor" it contains levels of genotype and attribute of "alleleNames" |
A data frame contains the allele frequency and percentage
González JR1, Armengol L, Solé X, Guinó E, Mercader JM, Estivill X, Moreno V(2007). SNPassoc: an R package to perform whole genome association studies. Bioinformatics. 2007 Mar 1;23(5):644-5. Epub 2007 Jan 31. DOI: 10.1093/bioinformatics/btm025.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | data(geneSNP)
s3 <- prep(geneSNP$snp10003)
summarySNP(s3)
#This data contains Genotypes:
#Genotyepes frequency percentage
#1 A/T 15 30.61
#2 C/C 1 2.04
#3 C/T 1 2.04
#4 G/C 16 32.65
#5 G/G 16 32.65
#
#
#This data contains Alleles:
#Alleles frequency petcentage
#1 A 15 18.52
#2 G 32 39.51
#3 C 18 22.22
#4 T 16 19.75
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.