mutation.selection: Gene frequencies over time under mutation-selection balance

In KlausVigo/popgenSim: Population genetic simulations & numerical analysis

Description

This function performs numerical analysis of mutation-selection balance with mutation from A to a and selection against (either or both of) Aa and aa.

Usage

	mutation.selection(p0=1.0,w=c(1,1),u=0.001,time=100,show="q",pause=0,ylim=c(0,1))

Arguments

p0	Starting frequency for the A allele.
w	Fitnesses of the heterozygote (Aa) and homozygote deleterious (aa) genotypes. The fitness of AA is assumed to be 1.0.
u	Rate at with A mutates to a.
time	Number of generations to run the analysis.
show	Two options for plotting. "q" shows the frequency of a through time; "fitness" plots the mean fitness over time. The default is show="q".
pause	Pause between generations. pause=0.01 (for instance) might smooth animation.
ylim	Limits on the y-axis for plotting.

Value

The function creates one of two possible plots, depending on the value of show.

Author(s)

Liam Revell [e-mail]

See Also

genetic.drift, selection

Examples

	mutation.selection(w=c(1,0),time=100,ylim=c(0,0.1))

KlausVigo/popgenSim documentation built on May 8, 2019, 5:38 p.m.