Man pages for Koohoko/SynMut
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
| codon_dist-methods | Calculating the codon usage difference between sequences |
| codon_mimic-methods | Mimic a target codon usage bias |
| codon_random-methods | Generate random synonymous mutations |
| codon_to-methods | Maximize or minimize the usage of certain codon. |
| dinu_dist-methods | Calculating the dinucleotide usage difference between... |
| dinu_to-methods | Maximize or minimize the usage of certain dinucleotide. |
| get_cu-methods | Get codon usage matrix |
| get_dna-methods | Get the DNAStringSet data |
| get_du-methods | Get dinucleotide usage matrix |
| get_freq-methods | Get codon usage frequency of synonymous codons |
| get_nu-methods | Get nucleotide usage matrix |
| get_region-methods | Get the variable region |
| get_rscu-methods | Get Relative Synonymous Codon Usage (rscu) of synonymous... |
| input_seq-methods | Import region / constructing regioned_dna object |
| regioned_dna-class | An S4 class to record DNA sequences and variable regions for... |
| seq_random-methods | Generate 'n' random DNA sequnces of length 'm' |
