get_du-methods: Get dinucleotide usage matrix
In Koohoko/SynMut: SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
get_du R Documentation
Get dinucleotide usage matrix
Description
Access the dinucleotide usage matrix
Usage
get_du(object, ...)
## S4 method for signature 'regioned_dna'
get_du(object)
## S4 method for signature 'DNAStringSet'
get_du(object)
Arguments
object
regioned_dna / DNAStringSet
...
...
Value
matrix
See Also
input_seq, get_region,
get_nu, get_cu, get_freq,
get_rscu
Examples
filepath <- system.file("extdata", "example.fasta", package = "SynMut")
rgd.seq <- input_seq(filepath)
get_du(rgd.seq)
Koohoko/SynMut documentation built on Jan. 9, 2023, 12:11 p.m.
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| get_du | R Documentation |
Get dinucleotide usage matrix
Description
Access the dinucleotide usage matrix
Usage
get_du(object, ...) ## S4 method for signature 'regioned_dna' get_du(object) ## S4 method for signature 'DNAStringSet' get_du(object)
Arguments
object |
regioned_dna / DNAStringSet |
... |
... |
Value
matrix
See Also
input_seq, get_region,
get_nu, get_cu, get_freq,
get_rscu
Examples
filepath <- system.file("extdata", "example.fasta", package = "SynMut")
rgd.seq <- input_seq(filepath)
get_du(rgd.seq)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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