codon_dist-methods | Calculating the codon usage difference between sequences |
codon_mimic-methods | Mimic a target codon usage bias |
codon_random-methods | Generate random synonymous mutations |
codon_to-methods | Maximize or minimize the usage of certain codon. |
dinu_dist-methods | Calculating the dinucleotide usage difference between... |
dinu_to-methods | Maximize or minimize the usage of certain dinucleotide. |
get_cu-methods | Get codon usage matrix |
get_dna-methods | Get the DNAStringSet data |
get_du-methods | Get dinucleotide usage matrix |
get_freq-methods | Get codon usage frequency of synonymous codons |
get_nu-methods | Get nucleotide usage matrix |
get_region-methods | Get the variable region |
get_rscu-methods | Get Relative Synonymous Codon Usage (rscu) of synonymous... |
input_seq-methods | Import region / constructing regioned_dna object |
regioned_dna-class | An S4 class to record DNA sequences and variable regions for... |
seq_random-methods | Generate 'n' random DNA sequnces of length 'm' |
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