Man pages for KopfLab/turnoveR
Processing tools for protein degradation experiments.
| tor_add_metadata | Add metadata |
| tor_add_protein_counts_info | Add protein counts info |
| tor_add_uniprot_info | Add uniprot information |
| tor_calculate_degradation_dissipation | Calculate degradation rate |
| tor_calculate_growth_params | Calculate growth parameters |
| tor_calculate_labeled_fraction | Calculate labeled fraction |
| tor_calculate_label_rate | Calculate protein or peptide labeling rate |
| tor_fetch_kegg_details | Fetch KEGG details |
| tor_fetch_kegg_pathway_details | Fetch KEGG pathway details |
| tor_fetch_kegg_pathway_maps | Fetch KEGG pathway maps |
| tor_fetch_kegg_pathways_for_species | Fetch all KEGG pathways for a species |
| tor_fetch_kegg_species | Fetch KEGG species |
| tor_fetch_uniprot_proteins | Fetch uniprot information |
| tor_fetch_uniprot_species | Fetch uniprot species |
| tor_filter_label_rate_fits | Filter label rate fits |
| tor_filter_peptides_by_spectral_fit_quality | Filter peptides |
| tor_plot_labeling_curves | Plot labeling curves |
| tor_plot_label_rate_error | Plot label rate error |
| tor_plot_label_rate_hist | Plot label rate histogram |
| tor_read_protein_counts_data | Read protein counts data |
| tor_read_svm_data_file | Read SVM data file |
| tor_recode_protein_ids | Rename proteins based on protein mapping file |
| tor_remove_list_columns | Remove complex data |
| tor_show_package_structure | Generate flow chart |
| turnoveR-package | turnoveR: Processing tools for protein degradation... |
