tor_fetch_kegg_pathway_maps: Fetch KEGG pathway maps

Description Usage Arguments Value

Description

Downloads basic KEGG pathway maps

Usage

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tor_fetch_kegg_pathway_maps(pathways, download_folder = "kegg",
  overwrite = FALSE, kgml = TRUE, species_png = TRUE,
  general_png = TRUE, quiet = TRUE, ...)

Arguments

pathways

data frame with columns kegg_org_id and kegg_pathway_id

download_folder

which folder to download to (relative to working directory or absolute), will be created if it does not exist

overwrite

whether to overwrite existing files

quiet

parameter passed to download.file

...

additional parameters passed on to download.file

Value

returns the unaltered pathways data frame


KopfLab/turnoveR documentation built on May 28, 2019, 3:33 p.m.