Files in KrasnitzLab/CNprep

Pre-process DNA Copy Number (CN) Data for Detection of CN Events

R/CNclusterNcenter.R R/CNprep.R R/CNpreprocessing.R R/applyCNPmask.R R/breakIntoCNPs.chrom.R R/breakIntoGaps.R R/centerprob.R R/consolidate.R R/containment.indicator.R R/get.center.R R/getz.R R/makeCNPmask.R R/makeCNPmask.chrom.R R/normalComparison.R R/segsample.R R/smad.R R/smedian.R R/smedian.sample.R R/smedmad.R R/validateCNpreprocessing.R R/validateMakeCNPmask.R R/weighted.median.R README.md man/CNclusterNcenter.Rd man/CNprep-package.Rd man/CNpreprocessing.Rd man/EMexample.Rd man/annotexample.Rd man/applyCNPmask.Rd man/breakIntoCNPs.chrom.Rd man/breakIntoGaps.Rd man/centerprob.Rd man/cnpexample.Rd man/consolidate.Rd man/containment.indicator.Rd man/get.center.Rd man/getz.Rd man/makeCNPmask.Rd man/makeCNPmask.chrom.Rd man/normalComparison.Rd man/normsegs.Rd man/ratexample.Rd man/segexample.Rd man/segsample.Rd man/smad.Rd man/smedian.Rd man/smedian.sample.Rd man/smedmad.Rd man/validateCNpreprocessing.Rd man/validateMakeCNPmask.Rd man/weighted.median.Rd tests/testthat.R tests/testthat/test-CNClusterNcenter.R tests/testthat/test-CNPreprocessing.R tests/testthat/test-applyCNPmask.R tests/testthat/test-breakIntoCNPs.chrom.R tests/testthat/test-breakIntoGaps.R tests/testthat/test-centerprob.R tests/testthat/test-consolidate.R tests/testthat/test-containment.indicator.R tests/testthat/test-get.center.R tests/testthat/test-getz.R tests/testthat/test-makeCNPmask.R tests/testthat/test-normalComparison.R tests/testthat/test-segsample.R tests/testthat/test-smad.R tests/testthat/test-smedian.R tests/testthat/test-smedian.sample.R tests/testthat/test-smedmad.R tests/testthat/test-validateCNpreprocessing.R tests/testthat/test-validateMakeCNPmask.R tests/testthat/test-weighted.median.R vignettes/CNprep.Rmd vignettes/figures/maskDemo01.pdf