CNprep-package: CNprep: Pre-process DNA Copy Number (CN) Data for Detection...

In KrasnitzLab/CNprep: Pre-process DNA Copy Number (CN) Data for Detection of CN Events

CNprep: Pre-process DNA Copy Number (CN) Data for Detection of CN Events

Description

This package evaluates DNA copy number data, using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the norm.

Author(s)

Alexander Krasnitz and Guoli Sun

Maintainer: Guoli Sun <[e-mail]>

See Also

• CNpreprocessing for pre-processing DNA copy number (CN) data for detection of CN events.

• makeCNPmask for creating a mask given a set of copy number events.

• applyCNPmask for applying a mask to a set of copy number events.

KrasnitzLab/CNprep documentation built on May 28, 2022, 8:32 p.m.