API for KrasnitzLab/SCclust
Clustering of Single Cell Sequencing Copy Number Profiles to Identify Clones
| Global functions | |
|---|---|
| augment_gc | Source code |
| calc_bins2regions | Man page Source code |
| calc_censored_index | Source code |
| calc_centroareas | Man page Source code |
| calc_pinmat | Man page Source code |
| calc_pinmat_short | Source code |
| calc_ploidies | Man page Source code |
| calc_ploidies_internal | Source code |
| calc_regions2bins | Man page Source code |
| calc_segments_short | Source code |
| calc_smear_breakpoints | Source code |
| case_filenames | Man page Source code |
| cbs_segment_ratio | Source code |
| cbs_segment_varbin | Source code |
| cell2cell_matrix | Source code |
| cells_filename | Source code |
| chrom_numeric | Man page Source code |
| construct_clonetracks | Source code |
| containment.indicator | Source code |
| fast_fisher | Source code |
| filter_dropareas_short | Source code |
| filter_evil_columns | Source code |
| filter_evil_short | Source code |
| filter_good_columns | Source code |
| filter_good_short | Source code |
| filter_homoloss_segments | Source code |
| find_clones | Man page Source code |
| find_subclones | Man page Source code |
| fisher_combo | Source code |
| fisher_dist | Man page Source code |
| fisher_fdr | Man page Source code |
| getmode | Source code |
| hc_climb | Source code |
| hclust_tree | Man page Source code |
| load_cytobands | Source code |
| load_mat | Source code |
| load_matrix | Source code |
| load_table | Source code |
| lowess_gc | Source code |
| metro | Source code |
| modeofmodes | Source code |
| remove_segment | Source code |
| save_mat | Source code |
| save_table | Source code |
| segment_varbin_files | Man page Source code |
| sgains_pipeline | Man page Source code |
| sim_fisher | Source code |
| sim_fisher_wrapper | Man page Source code |
| stouffer_combo | Source code |
| tree_clustersize | Source code |
| tree_py | Man page Source code |
| uber_cells | Source code |
| varbin_input_files | Man page Source code |
