The SCclust package implements feature selection based on breakpoints, permutations for FDRs for Fisher test p-values and identification of the clone structure in single cell copy number profiles.
Threre are two alternative ways to install SCclust package:
installation from source;
intallation as a conda package.
Download SCclust
source package from Github:
https://github.com/KrasnitzLab/SCclust/archive/refs/tags/1.0.7.tar.gz
into your working directory;
Run R
and install the package from downloaded source:
install.packages("SCclust-1.0.7.tar.gz")
The SCclust
package can also be installed using KrasnitzLab Anaconda channel. First create a new conda environment:
conda create -n scclust
conda activate scclust
and after that install SCclust
inside it:
conda install -c bioconda -c conda-forge -c krasnitzlab scclust
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