API for KrasnitzLab/SCclust
Clustering of Single Cell Sequencing Copy Number Profiles to Identify Clones

Global functions
augment_gc Source code
calc_bins2regions Man page Source code
calc_censored_index Source code
calc_centroareas Man page Source code
calc_pinmat Man page Source code
calc_pinmat_short Source code
calc_ploidies Man page Source code
calc_ploidies_internal Source code
calc_regions2bins Man page Source code
calc_segments_short Source code
calc_smear_breakpoints Source code
case_filenames Man page Source code
cbs_segment_ratio Source code
cbs_segment_varbin Source code
cell2cell_matrix Source code
cells_filename Source code
chrom_numeric Man page Source code
construct_clonetracks Source code
containment.indicator Source code
fast_fisher Source code
filter_dropareas_short Source code
filter_evil_columns Source code
filter_evil_short Source code
filter_good_columns Source code
filter_good_short Source code
filter_homoloss_segments Source code
find_clones Man page Source code
find_subclones Man page Source code
fisher_combo Source code
fisher_dist Man page Source code
fisher_fdr Man page Source code
getmode Source code
hc_climb Source code
hclust_tree Man page Source code
load_cytobands Source code
load_mat Source code
load_table Source code
lowess_gc Source code
metro Source code
modeofmodes Source code
remove_segment Source code
save_mat Source code
save_table Source code
sdundo_all Source code
segment_varbin_files Man page Source code
sgains_pipeline Man page Source code
sim_fisher Source code
sim_fisher_wrapper Man page Source code
stouffer_combo Source code
tree_clustersize Source code
tree_py Man page Source code
uber_cells Source code
varbin_input_files Man page Source code
KrasnitzLab/SCclust documentation built on Dec. 12, 2018, 8:44 p.m.