CheckToolAll: CheckToolAll

View source: R/cmd_batch_rnaseq_environment_set.R

CheckToolAllR Documentation

CheckToolAll

Description

Check whether 'Hisat2', 'Stringtie' and 'Gffcompare' are installed on the workstation

Usage

CheckToolAll(path.prefix, print = TRUE)

Arguments

path.prefix

path prefix of 'gene_data/', 'RNASeq_bin/', 'RNASeq_results/', 'Rscript/' and 'Rscript_out/' directories.

print

If TRUE, detailed information will be printed. If FALSE, detailed information will not be printed.

Value

None

Examples

data(yeast)
## Not run: 
CheckToolAll(yeast@path.prefix,
             print=TRUE)
## End(Not run)

Kuanhao-Chao/RNASeqR documentation built on May 12, 2022, 8:15 a.m.