README.md

In LBMC/criblejurkat: Analysis of FACS data for the Jurkat crible project

This project can now be found at https://gitbio.ens-lyon.fr/LBMC/Jalinot/criblejurkat

criblejurkat R package

This repository is an R package for the automatic analaysis for fcs data for the jurkat drug crible project.

Getting Started

These instructions will help you setup your environement to use this package

Prerequisites

On ubunutu, you needd R and other packages :

apt-get update
apt-get install r-base libssl-dev libcurl4-openssl-dev libssh2-1-dev ca-certificates libxml2-dev r-cran-nloptr libboost-regex-dev 

In R, you need to install the packages devtools:

install.packages("devtools")

Installing

You can install the package directly from github with the following command:

devtools::install_github("LBMC/criblejurkat")

Examples

To analyse a single fcs folder (in the set folder):

criblejurkat::set_analysis("data/set/")

To analyse many fcs folders (in the sets folder)

criblejurkat::analysis("data/")

The analysis results will be copied in a results/set or results/sets/setx folder

Authors

• Laurent Modolo - Initial work

See also the list of contributors who participated in this project.

License

This project is licensed under the CeCiLL License- see the LICENSE file for details

LBMC/criblejurkat documentation built on Sept. 13, 2020, 7:58 p.m.