anova_lm: build lm model between drugs accounting for batch effect

In LBMC/criblejurkat: Analysis of FACS data for the Jurkat crible project

Description

build lm model between drugs accounting for batch effect

Usage

anova_lm(
  data,
  formula = "ratio ~ drug + batch",
  lower = TRUE,
  outdir,
  chunk = nrow(data)
)

Arguments

data	a data.frame
formula	(default: "ratio ~ drug + batch") the formula of the model
lower	(default: TRUE) tests if "y" (the ratio) is lower than in controls
outdir	set the outdir directory to a path (default extracted from fcs)
chunk	(default: 20000) size of data chunk to do the computation on

Value

a data.frame

Examples

## Not run: 
data <- anova_lm(data)

## End(Not run)

LBMC/criblejurkat documentation built on Sept. 13, 2020, 7:58 p.m.