Man pages for LBMC/criblejurkat
Analysis of FACS data for the Jurkat crible project
| analysis | perform all the analysis for a set of data sets |
| anova_lm | build lm model between drugs accounting for batch effect |
| anova_rlm | build rlm model between drugs accounting for batch effect |
| flowset2dataframe | convert annotated flowSet to data.frame |
| get_files | get list of file from a folder |
| load_annotation | read annotation.csv files in a folder |
| load_data | read fcs files in a folder |
| mk_outdir | create outdir |
| move_none_well | convert data from anova_rlm to well position in chemical data... |
| plot_column | plot the ratio distribution per column |
| plot_line | plot the ratio distribution per line |
| plot_well | plot the ratio distribution per well |
| project_name | get project name |
| rm_debris | remove debris from data |
| rm_nonfluo | remove outliers on fluorecence channels |
| rm_nonsinglets | remove non singlets |
| scaled_pval | plot the ratio distribution per well |
| set_analysis | perform all the analysis for a given data set |
| split_lm | split lm model by chunck with biglm |
