API for LTLA/SingleCellExperiment
S4 Classes for Single Cell Data

Global functions
$,LinearEmbeddingMatrix-method Man page
$<-,LinearEmbeddingMatrix-method Man page
% Man page
.absent_action Source code
.any2dualsubset Source code Source code
.check_altexp_columns Source code
.check_reddim_attributes Source code
.check_reddim_names Source code
.clean_internal_names Source code
.combine_coldata Source code
.combine_reddims Source code
.combine_rowranges Source code
.convert_subset_index Source code
.create_shell_coldata Source code
.create_shell_rowdata Source code
.dedup_args Source code
.fill_altexps_info Source code
.get_hits Source code
.get_internal_all Source code
.get_internal_character Source code
.get_internal_integer Source code
.get_internal_missing Source code
.get_internal_names Source code
.get_se Source code
.hits2mat Source code
.le_show Source code
.le_validity Source code
.mat2hits Source code
.rse_to_sce Source code
.sce_show Source code
.sce_validity Source code
.set_internal_all Source code
.set_internal_character Source code
.set_internal_missing Source code
.set_internal_names Source code
.set_internal_numeric Source code
.unsplit_assays Source code
DualSubset Source code
Dumping Man page
GET_FUN Source code
LinearEmbeddingMatrix Man page Source code
LinearEmbeddingMatrix-class Man page
SCE-assays Man page
SCE-combine Man page
SCE-internals Man page
SCE-miscellaneous Man page
SEBC Man page
SET_FUN Source code
SingleCellExperiment Man page Source code
SingleCellExperiment-class Man page
SummarizedExperimentByColumn Source code
[,DualSubset,ANY,ANY,ANY-method Man page
[,LinearEmbeddingMatrix,ANY,ANY,ANY-method Man page
[,LinearEmbeddingMatrix,ANY,ANY-method Man page
[,LinearEmbeddingMatrix,ANY-method Man page
[,SingleCellExperiment,ANY,ANY,ANY-method Man page
[,SingleCellExperiment,ANY,ANY-method Man page
[,SingleCellExperiment,ANY-method Man page
[,SummarizedExperimentByColumn,ANY,ANY,ANY-method Man page
[.reduced.dim.matrix Man page
[<-,DualSubset,ANY,ANY,ANY-method Man page
[<-,LinearEmbeddingMatrix,ANY,ANY,LinearEmbeddingMatrix-method Man page
[<-,SingleCellExperiment,ANY,ANY,SingleCellExperiment-method Man page
[<-,SummarizedExperimentByColumn,ANY,ANY,ANY-method Man page
`[.reduced.dim.matrix` Source code
altExp Man page
altExp,SingleCellExperiment,character-method Man page
altExp,SingleCellExperiment,missing-method Man page
altExp,SingleCellExperiment,numeric-method Man page
altExp<- Man page
altExp<-,SingleCellExperiment,character-method Man page
altExp<-,SingleCellExperiment,missing-method Man page
altExp<-,SingleCellExperiment,numeric-method Man page
altExpNames Man page
altExpNames,SingleCellExperiment-method Man page
altExpNames<- Man page
altExpNames<-,SingleCellExperiment,character-method Man page
altExps Man page
altExps,SingleCellExperiment-method Man page
altExps<- Man page
altExps<-,SingleCellExperiment-method Man page
applySCE Man page Source code
as.matrix,LinearEmbeddingMatrix-method Man page
as.matrix.LinearEmbeddingMatrix Source code
c,DualSubset-method Man page
c,SummarizedExperimentByColumn-method Man page
cbind,LinearEmbeddingMatrix-method Man page
cbind,SingleCellExperiment-method Man page
cbind.reduced.dim.matrix Man page Source code
check Man page
clearSizeFactors Man page
clearSpikes Man page
coerce,RangedSummarizedExperiment,SingleCellExperiment-method Man page
coerce,SummarizedExperiment,SingleCellExperiment-method Man page
colData,SingleCellExperiment-method Man page
colLabels Man page
colLabels,SingleCellExperiment-method Man page
colLabels<- Man page
colLabels<-,SingleCellExperiment-method Man page
colPair Man page
colPair,SingleCellExperiment,character-method Man page
colPair,SingleCellExperiment,missing-method Man page
colPair,SingleCellExperiment,numeric-method Man page
colPair<- Man page
colPair<-,SingleCellExperiment,character-method Man page
colPair<-,SingleCellExperiment,missing-method Man page
colPair<-,SingleCellExperiment,numeric-method Man page
colPairNames Man page
colPairNames,SingleCellExperiment-method Man page
colPairNames<- Man page
colPairNames<-,SingleCellExperiment,character-method Man page
colPairs Man page
colPairs,SingleCellExperiment-method Man page
colPairs<- Man page
colPairs<-,SingleCellExperiment-method Man page
combineCols,SingleCellExperiment-method Man page
complain. Man page
counts Man page
counts,SingleCellExperiment-method Man page
counts<- Man page
counts<-,SingleCellExperiment-method Man page
cpm Man page
cpm,SingleCellExperiment-method Man page
cpm<- Man page
cpm<-,SingleCellExperiment-method Man page
defunct Man page
dim,LinearEmbeddingMatrix-method Man page
dimnames,LinearEmbeddingMatrix-method Man page
dimnames<-,LinearEmbeddingMatrix,ANY-method Man page
dimnames<-,LinearEmbeddingMatrix-method Man page
doesn't Man page
factorData Man page
factorData,LinearEmbeddingMatrix-method Man page
factorData<- Man page
factorData<-,LinearEmbeddingMatrix-method Man page
featureLoadings Man page
featureLoadings,LinearEmbeddingMatrix-method Man page
featureLoadings<- Man page
featureLoadings<-,LinearEmbeddingMatrix-method Man page
here, Man page
int_colData Man page
int_colData,SingleCellExperiment-method Man page
int_colData<- Man page
int_colData<-,SingleCellExperiment-method Man page
int_elementMetadata Man page
int_elementMetadata,SingleCellExperiment-method Man page
int_elementMetadata<- Man page
int_elementMetadata<-,SingleCellExperiment-method Man page
int_metadata Man page
int_metadata,SingleCellExperiment-method Man page
int_metadata<- Man page
int_metadata<-,SingleCellExperiment-method Man page
isSpike Man page
isSpike<- Man page
length,DualSubset-method Man page
length,SummarizedExperimentByColumn-method Man page
logcounts Man page
logcounts,SingleCellExperiment-method Man page
logcounts<- Man page
logcounts<-,SingleCellExperiment-method Man page
mainExpName Man page
mainExpName,SingleCellExperiment-method Man page
mainExpName<- Man page
mainExpName<-,SingleCellExperiment,character_OR_NULL-method Man page
methods Man page
names,SummarizedExperimentByColumn-method Man page
names<-,SummarizedExperimentByColumn-method Man page
normcounts Man page
normcounts,SingleCellExperiment-method Man page
normcounts<- Man page
normcounts<-,SingleCellExperiment-method Man page
objectVersion Man page
objectVersion,SingleCellExperiment-method Man page
parallel_slot_names,SingleCellExperiment-method Man page
rbind,LinearEmbeddingMatrix-method Man page
rbind,SingleCellExperiment-method Man page
rbind.reduced.dim.matrix Man page Source code
reduced.dim.matrix Man page Source code
reduced.dim.matrix-class Man page
reducedDim Man page
reducedDim,SingleCellExperiment,character-method Man page
reducedDim,SingleCellExperiment,missing-method Man page
reducedDim,SingleCellExperiment,numeric-method Man page
reducedDim<- Man page
reducedDim<-,SingleCellExperiment,character-method Man page
reducedDim<-,SingleCellExperiment,missing-method Man page
reducedDim<-,SingleCellExperiment,numeric-method Man page
reducedDimNames Man page
reducedDimNames,SingleCellExperiment-method Man page
reducedDimNames<- Man page
reducedDimNames<-,SingleCellExperiment,character-method Man page
reducedDims Man page
reducedDims,SingleCellExperiment-method Man page
reducedDims<- Man page
reducedDims<-,SingleCellExperiment-method Man page
removeAltExps Man page Source code
rowData,SingleCellExperiment-method Man page
rowPair Man page
rowPair,SingleCellExperiment,character-method Man page
rowPair,SingleCellExperiment,missing-method Man page
rowPair,SingleCellExperiment,numeric-method Man page
rowPair<- Man page
rowPair<-,SingleCellExperiment,character-method Man page
rowPair<-,SingleCellExperiment,missing-method Man page
rowPair<-,SingleCellExperiment,numeric-method Man page
rowPairNames Man page
rowPairNames,SingleCellExperiment-method Man page
rowPairNames<- Man page
rowPairNames<-,SingleCellExperiment,character-method Man page
rowPairs Man page
rowPairs,SingleCellExperiment-method Man page
rowPairs<- Man page
rowPairs<-,SingleCellExperiment-method Man page
rowSubset Man page
rowSubset,SingleCellExperiment-method Man page
rowSubset<- Man page
rowSubset<-,SingleCellExperiment-method Man page
sampleFactors Man page
sampleFactors,LinearEmbeddingMatrix-method Man page
sampleFactors<- Man page
sampleFactors<-,LinearEmbeddingMatrix-method Man page
show,LinearEmbeddingMatrix-method Man page
show,SingleCellExperiment-method Man page
simplifyToSCE Man page Source code
sizeFactorNames Man page
sizeFactors Man page
sizeFactors,SingleCellExperiment-method Man page
sizeFactors<-,SingleCellExperiment-method Man page
so Man page
spikeNames Man page
splitAltExps Man page Source code
swapAltExp Man page Source code
that Man page
the Man page
tpm Man page
tpm,SingleCellExperiment-method Man page
tpm<- Man page
tpm<-,SingleCellExperiment-method Man page
unsplitAltExps Man page Source code
updateObject Man page
updateObject,SingleCellExperiment-method Man page
weights Man page
weights,SingleCellExperiment-method Man page
weights<- Man page
weights<-,SingleCellExperiment-method Man page
LTLA/SingleCellExperiment documentation built on May 25, 2021, 3:42 a.m.