API for LTLA/diffHic
Differential Analyis of Hi-C Data

Global functions
$,pairParam-method Man page
.addGroup Source code
.addToTotal Source code
.assignBins Source code
.binReads Source code
.check_StrictGI Source code
.compartChr Source code
.createBins Source code
.direct_filter Source code
.editRestrict Source code
.enforcePairOrder Source code
.forgeNewFun Source code
.generalLoopFUN Source code
.get.new.col Source code
.getBinSize Source code
.getInterThreshold Source code
.getPairs Source code
.getStats Source code
.initializeH5 Source code
.isDNaseC Source code
.linkFrag Source code
.linkRaw Source code
.makeEmpty Source code
.minBoundingBox Source code
.neighbor_locales Source code
.neighbor_numbers Source code
.notList Source code
.plotDiag Source code
.prepFreePairs Source code
.processRegionsFrag Source code
.processRegionsRaw Source code
.process_output Source code
.readToBin Source code
.redefineRegions Source code
.restrictRegions Source code
.spawnVertices Source code
.splitByChr Source code
.splitDiscards Source code
.trended_filter Source code
.uniqConcat Source code
.writePairs Source code
EMPTY_FUN Source code
RETRIEVAL_FUN Source code
annotatePairs Man page Source code
boxPairs Man page Source code
clusterPairs Man page Source code
compartmentalize Man page Source code
connectCounts Man page Source code
consolidatePairs Man page Source code
correctedContact Man page Source code
cutGenome Man page Source code
diClusters Man page Source code
diffHic Man page
diffHicUsersGuide Man page Source code
domainDirections Man page Source code
emptyGenome Man page Source code
enrichedPairs Man page Source code
extractPatch Man page Source code
filterDiag Man page Source code
filterDirect Man page Source code
filterPeaks Man page Source code
filterTrended Man page Source code
getArea Man page Source code
getPairData Man page Source code
loadChromos Man page Source code
loadData Man page Source code
marginCounts Man page Source code
matchMargins Man page Source code
mergeCMs Man page Source code
mergePairs Man page Source code
neighborCounts Man page Source code
normalizeCNV Man page Source code
pairParam Man page Source code
pairParam-class Man page
plotDI Man page Source code
plotPlaid Man page Source code
preloader Source code
prepPseudoPairs Man page Source code
preparePairs Man page Source code
prunePairs Man page Source code
readMTX2IntSet Man page Source code
reform Man page
reform,pairParam-method Man page
rotDI Man page Source code
rotPlaid Man page Source code
savePairs Man page Source code
segmentGenome Man page Source code
show,pairParam-method Man page
squareCounts Man page Source code
totalCounts Man page Source code
LTLA/diffHic documentation built on April 1, 2024, 7:21 a.m.