API for LTLA/diffHic
Differential Analyis of Hi-C Data

Global functions
$,pairParam-method Man page
EMPTY_FUN Source code
RETRIEVAL_FUN Source code
addGroup Source code
annotatePairs Man page Source code
assignBins Source code
binReads Source code
boxPairs Man page Source code
check_StrictGI Source code
clusterPairs Man page Source code
compartChr Source code
compartmentalize Man page Source code
connectCounts Man page Source code
consolidatePairs Man page Source code
correctedContact Man page Source code
createBins Source code
cutGenome Man page Source code
diClusters Man page Source code
diffHic Man page
diffHicUsersGuide Man page Source code
direct_filter Source code
domainDirections Man page Source code
editRestrict Source code
emptyGenome Man page Source code
enforcePairOrder Source code
enrichedPairs Man page Source code
extractPatch Man page Source code
filterDiag Man page Source code
filterDirect Man page Source code
filterPeaks Man page Source code
filterTrended Man page Source code
forgeNewFun Source code
generalLoopFUN Source code
get.new.col Source code
getArea Man page Source code
getBinSize Source code
getInterThreshold Source code
getPairData Man page Source code
getPairs Source code
getStats Source code
linkFrag Source code
linkRaw Source code
loadChromos Man page Source code
loadData Man page Source code
makeEmpty Source code
marginCounts Man page Source code
matchMargins Man page Source code
mergeCMs Man page Source code
mergePairs Man page Source code
minBoundingBox Source code
neighborCounts Man page Source code
neighbor_locales Source code
neighbor_numbers Source code
nitializeH5 Source code
normalizeCNV Man page Source code
notList Source code
pairParam Man page Source code
pairParam-class Man page
plotDI Man page Source code
plotDiag Source code
plotPlaid Man page Source code
preloader Source code
prepFreePairs Source code
prepPseudoPairs Man page Source code
preparePairs Man page Source code
processRegionsFrag Source code
processRegionsRaw Source code
process_output Source code
prunePairs Man page Source code
readMTX2IntSet Man page Source code
readToBin Source code
redefineRegions Source code
reform Man page
reform,pairParam-method Man page
restrictRegions Source code
rotDI Man page Source code
rotPlaid Man page Source code
sDNaseC Source code
savePairs Man page Source code
segmentGenome Man page Source code
show,pairParam-method Man page
spawnVertices Source code
splitByChr Source code
splitDiscards Source code
squareCounts Man page Source code
totalCounts Man page Source code
trended_filter Source code
uniqConcat Source code
writePairs Source code
LTLA/diffHic documentation built on Aug. 15, 2018, 4:34 a.m.